PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G046200.1
Common NameB456_006G046200, LOC105798497
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 227aa    MW: 24819.7 Da    PI: 4.8894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G046200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.8e-1860110155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr +k++g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  Gorai.006G046200.1  60 PVYRGVR-RKNSGKWVCEVREP---NKKSRIWLGTFLTAEMAARAHDVAAIALRG 110
                         68****9.6779******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1260110IPR001471AP2/ERF domain
SMARTSM003801.9E-2961124IPR001471AP2/ERF domain
PROSITE profilePS5103221.86561118IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2061120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-3161120IPR001471AP2/ERF domain
CDDcd000186.30E-3062120No hitNo description
PRINTSPR003672.6E-86273IPR001471AP2/ERF domain
PRINTSPR003672.6E-884100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEPFALDCDM LDSGSVSSPL SDSGSGTSRP ANFSDEDVML ASSCPKKRAG RKKFRETRHP  60
VYRGVRRKNS GKWVCEVREP NKKSRIWLGT FLTAEMAARA HDVAAIALRG RSACLNFADS  120
AWRLPVPASA DPKDIQKAAA EAAEAFRQPA EQWEGNSEAN AKGDENKGSL CENGFYLDEE  180
AVFGTQSYLE NMAAGMMMSP PRCGYNGDEL EYDAADDIIP LWSYCQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2332500.0KR233250.1 Gossypium barbadense C-repeat binding factor 1-like protein (CBF1L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484045.11e-168PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ935e-77DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0D2NLX81e-168A0A0D2NLX8_G
STRINGPOPTR_0012s13870.19e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.15e-73C-repeat-binding factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]